How to Effectively Prevent Microorganism and Algae Proliferation in Seawater Desalination Systems?| Insights by AQUALITEK

Tuesday, 01/13/2026

Microorganisms and algae are major threats to seawater desalination systems. Learn the most effective strategies to prevent biological proliferation and protect membranes from biofouling.

Introduction

Seawater is a highly biologically active medium.
It naturally contains:

Bacteria

Algae

Plankton

Biofilm-forming microorganisms

In seawater reverse osmosis (SWRO) systems, biological proliferation is one of the most destructive and difficult-to-control problems. Once biofouling establishes itself, it can lead to:

Rapid pressure drop increase

Irreversible membrane fouling

Frequent chemical cleaning

Premature membrane failure

The key principle is simple:

You cannot sterilize seawater, but you can effectively prevent uncontrolled biological growth.

This article explains practical, proven strategies to prevent microorganism and algae proliferation throughout a seawater RO system.

1. Understand the Root Cause of Biological Proliferation

Microorganisms and algae proliferate when three conditions coexist:

1.Living organisms (always present in seawater)

2.Nutrients (organic matter, ammonia, phosphates)

3.Favorable conditions (low flow, warm temperature, stagnant zones)

Effective prevention focuses on removing nutrients and eliminating favorable growth environments, rather than trying to kill everything.

2. Proper Seawater Intake Design (First Line of Defense)

Why Intake Design Matters

Many biological problems originate before pretreatment even begins.

Best Practices

Locate intake away from:

Harbors and wastewater outlets

Shallow coastal zones with algae blooms

Use deep-water or offshore intakes where possible

Install coarse screens to block large organisms

A well-designed intake significantly reduces:

Algae load

Plankton intrusion

Seasonal bloom impacts

3. Continuous or Intermittent Oxidant Dosing (Upstream Only)

Purpose

Controlled oxidant dosing is used to:

Suppress biological activity in intake pipelines

Prevent biofilm formation before filtration

Common Oxidants

Sodium hypochlorite

Chlorine gas

Ozone (limited cases)

Critical Rule

All oxidants must be completely removed before RO membranes.

Control Measures

Dechlorination using sodium metabisulfite (SMBS)

ORP and residual chlorine monitoring

Oxidants are effective only when used upstream and carefully controlled.

4. Optimize Coagulation and Flocculation to Remove Biomass

Why This Is Crucial

Many microorganisms and algae are:

Too large to pass membranes

Too small to settle naturally

Optimized coagulation:

Agglomerates algae and bacteria

Removes them physically instead of killing them

Key Factors

Correct coagulant selection

Proper dosing rate

Adequate flocculation time

This step dramatically reduces biological load entering filtration units.

5. High-Performance Filtration (Media Filter or UF)

Filtration as a Physical Barrier

Filtration removes:

Algae cells

Bacterial clusters

Organic debris

Recommended Targets

Turbidity ≤ 0.5 NTU

SDI₁₅ ≤ 3–5

Ultrafiltration Advantage

UF systems provide:

Consistent biological removal

Strong resistance to seasonal algae blooms

More stable RO operation

6. Avoid Nutrient Accumulation in the System

Even trace nutrients can support biofilm growth.

Key Nutrients to Control

Dissolved organic carbon (DOC)

Ammonia

Phosphates

Control Strategies

Effective organic removal in pretreatment

Avoid chemical overdosing

Prevent coagulant and polymer carryover

7. Eliminate Dead Zones and Stagnant Flow

Why Hydraulics Matter

Microorganisms thrive in:

Low-flow zones

Dead ends

Idle pipelines

Design & Operation Measures

Avoid oversized pipelines

Minimize dead legs

Maintain minimum flushing velocities

Flush idle units regularly

Good hydraulics are one of the most underrated biofouling control measures.

8. Controlled Use of Non-Oxidizing Biocides (When Necessary)

When to Use

Severe biological fouling risk

Warm seawater environments

Persistent biofouling history

Key Principles

Use intermittently, not continuously

Rotate biocides to avoid resistance

Ensure compatibility with membranes

Biocides are a supportive tool, not a primary solution.

9. Proper Shutdown and Standby Protection

During shutdowns:

Biological growth accelerates rapidly

Best Practices

Flush system with clean, low-nutrient water

Avoid long stagnant periods

Apply preservation chemicals for long shutdowns

Many biofouling incidents originate during system downtime.

Conclusion

Preventing microorganism and algae proliferation in seawater RO systems requires a system-wide, preventive strategy, not a single treatment step.

Effective control relies on:

Smart intake design

Physical removal over chemical killing

Nutrient reduction

Hydraulic optimization

Careful chemical management

When done correctly, these measures:

Greatly reduce biofouling risk

Extend membrane life

Stabilize RO performance

Lower operating costs

In SWRO systems, biofouling prevention is always more effective—and cheaper—than biofouling removal.

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