Why Extended Flushing Without Tank Filling Is Required During Initial RO System Startup| Insights by AQUALITEK

Friday, 12/19/2025

During the initial startup of a new RO system, operators are often instructed to flush the system for an extended period without sending permeate to the product water tank. This practice is not optional—it is essential for system safety, membrane protection, and long-term water quality stability. This article explains the technical reasons behind this critical startup procedure.

What Is Initial Startup Flushing?

Initial startup flushing refers to operating the RO system:

With permeate diverted to drain, not the storage tank

At low or controlled pressure

For an extended period (often several hours)

This process applies to:

Newly installed RO systems

Systems after major modification

Systems with newly installed membranes or pretreatment media

Key Reasons for Extended Flushing Without Filling the Tank

1. Removal of Preservatives from New RO Membranes

New RO membranes are shipped with chemical preservatives, such as:

Sodium metabisulfite (SMBS)

Glycerin-based protection agents

These chemicals:

Are not suitable for consumption or industrial use

Can cause odor, taste, or downstream contamination

Extended flushing ensures complete removal of preservatives before product water is collected.

2. Elimination of Installation Debris and Manufacturing Residues

New systems often contain:

Dust and metal shavings from piping

Glue, grease, and sealing compounds

Carbon fines from pretreatment filters

Without sufficient flushing, these contaminants can:

Enter the product water tank

Pollute downstream processes

Cause long-term water quality issues

3. Prevention of Early Membrane Fouling

During early operation:

Flow paths are unstable

Fine particles may still be present

Pretreatment performance is not fully stabilized

Sending this water to the tank risks:

Fouling membranes prematurely

Contaminating storage tanks and pipelines

Flushing protects both membranes and the entire downstream system.

4. Stabilization of Operating Parameters

New systems require time for:

Pressure to stabilize

Flow rates to balance

Conductivity readings to normalize

Initial permeate often shows:

Elevated conductivity

Unstable pH

Fluctuating flow

Only after extended flushing do readings reflect true operating performance.

5. Avoidance of Biological Contamination

Preservatives, organic residues, and stagnant water can:

Promote bacterial growth

Create biofilm risks in tanks

By flushing to drain:

Contaminated water is removed

Clean baseline conditions are established

Once water enters the tank, contamination becomes much harder to eliminate.

6. Protection of Product Water Storage Tanks

Product tanks are designed for qualified water only.

If contaminated water enters:

Tank cleaning may be required

Disinfection becomes necessary

Production may be delayed

Preventing contamination is far more efficient than corrective cleaning.

How Long Should Initial Flushing Last?

Typical industry practice:

2–6 hours for small systems

8–24 hours for large industrial RO systems

Flushing should continue until:

Permeate conductivity stabilizes

No odor is detected

Water meets quality specifications

Always follow membrane supplier and system manufacturer guidelines.

Best Practices During Initial Flushing

✔ Divert permeate to drain
✔ Operate at low or staged pressure
✔ Monitor conductivity and pH trends
✔ Do not rush tank filling
✔ Record baseline operating data

Common Mistakes to Avoid

❌ Filling the product tank too early
❌ Judging water quality by appearance only
❌ Ignoring odor or conductivity fluctuations
❌ Skipping flushing to save time

These mistakes often lead to long-term operational problems.

Conclusion

Extended flushing without filling the tank during initial RO system startup is a critical protective measure. It removes preservatives, debris, and unstable water, stabilizes system performance, and prevents contamination of storage tanks and downstream processes. Skipping or shortening this step can compromise water quality and significantly increase maintenance costs later.

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